|
SARS-CoV-2 workflow: nextclade.tsv.zst description
|
|
3
|
22
|
July 19, 2026
|
|
SARS-CoV-2 - no entry in nightly build for RW.1.1.2?
|
|
1
|
51
|
July 4, 2026
|
|
Treetime dating - Negative branch lengths
|
|
1
|
67
|
May 25, 2026
|
|
SARS-CoV-2 - no PQ.16.1.1 calls?
|
|
2
|
144
|
May 25, 2026
|
|
Include external tools in the Nextstrain Snakemake workflow
|
|
3
|
75
|
February 6, 2026
|
|
How to get the correct time axis when using augur refine and timetree?
|
|
4
|
98
|
February 4, 2026
|
|
Nextclade short clade annotation H1N1
|
|
1
|
55
|
January 15, 2026
|
|
How to set up next strain
|
|
2
|
55
|
January 8, 2026
|
|
How can one identify host-adaptive/associated mutations from a tree?
|
|
0
|
51
|
May 25, 2025
|
|
How to map SARS-COV-2 Clades to WHO name?
|
|
1
|
48
|
March 15, 2025
|
|
Annotation error for aa translation
|
|
2
|
67
|
February 3, 2025
|
|
Aligned nucleotide sequence does not match the CDS translation
|
|
1
|
120
|
January 9, 2025
|
|
Frequency map problem
|
|
2
|
87
|
December 20, 2024
|
|
`nextclade sort` Using a serverless local dataset for sorting
|
|
2
|
96
|
November 20, 2024
|
|
Iqtree error: Tree taxa and alignment sequence do not match
|
|
10
|
556
|
November 6, 2024
|
|
Reduce number of references in RSV phylogenetic tree - Nextclade CLI
|
|
1
|
63
|
September 9, 2024
|
|
Methods to automate the list of pangos for augur filter?
|
|
8
|
161
|
August 27, 2024
|
|
Question about upload protocol for remote upload
|
|
1
|
52
|
August 20, 2024
|
|
Titer measurement formats and conversion to csv for nextflu
|
|
3
|
76
|
July 30, 2024
|
|
How to change the reference sequence?
|
|
2
|
95
|
July 18, 2024
|
|
Lost the tip names (labels)
|
|
2
|
213
|
July 11, 2024
|
|
Reference tree for RSV used in NextClade webstie
|
|
3
|
286
|
June 19, 2024
|
|
How can I know the Nextclade_pango for each of SC2 sequences?
|
|
4
|
1069
|
June 15, 2024
|
|
Question about mafft alignment using a reference sequence
|
|
2
|
378
|
June 14, 2024
|
|
Selection of RSV reference sequences
|
|
2
|
290
|
May 23, 2024
|
|
Problems for the SARS-CoV-2 Workflow
|
|
1
|
460
|
May 19, 2023
|
|
Inferring pathogen.json from a nextclade.tsv results
|
|
0
|
162
|
April 16, 2024
|
|
When Nextclade CLI calls clades but Nextclade Web does not
|
|
0
|
162
|
April 16, 2024
|
|
IQTREE error: Some sequences (see above) are problematic, please check your alignment again
|
|
3
|
1037
|
April 11, 2024
|
|
Can't open this page!
|
|
1
|
174
|
March 12, 2024
|