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SARS-CoV-2 workflow: nextclade.tsv.zst description
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3
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65
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July 19, 2026
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SARS-CoV-2 - no entry in nightly build for RW.1.1.2?
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1
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56
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July 4, 2026
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Treetime dating - Negative branch lengths
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1
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109
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May 25, 2026
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SARS-CoV-2 - no PQ.16.1.1 calls?
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2
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168
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May 25, 2026
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Include external tools in the Nextstrain Snakemake workflow
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3
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87
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February 6, 2026
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How to get the correct time axis when using augur refine and timetree?
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4
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124
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February 4, 2026
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Nextclade short clade annotation H1N1
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1
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62
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January 15, 2026
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How to set up next strain
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2
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65
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January 8, 2026
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How can one identify host-adaptive/associated mutations from a tree?
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0
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55
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May 25, 2025
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How to map SARS-COV-2 Clades to WHO name?
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1
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57
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March 15, 2025
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Annotation error for aa translation
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2
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81
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February 3, 2025
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Aligned nucleotide sequence does not match the CDS translation
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1
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130
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January 9, 2025
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Frequency map problem
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2
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105
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December 20, 2024
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`nextclade sort` Using a serverless local dataset for sorting
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2
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110
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November 20, 2024
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Iqtree error: Tree taxa and alignment sequence do not match
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10
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596
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November 6, 2024
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Reduce number of references in RSV phylogenetic tree - Nextclade CLI
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1
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67
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September 9, 2024
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Methods to automate the list of pangos for augur filter?
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8
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180
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August 27, 2024
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Question about upload protocol for remote upload
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1
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64
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August 20, 2024
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Titer measurement formats and conversion to csv for nextflu
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3
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90
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July 30, 2024
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How to change the reference sequence?
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2
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110
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July 18, 2024
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Lost the tip names (labels)
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2
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223
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July 11, 2024
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Reference tree for RSV used in NextClade webstie
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3
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306
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June 19, 2024
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How can I know the Nextclade_pango for each of SC2 sequences?
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4
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1087
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June 15, 2024
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Question about mafft alignment using a reference sequence
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2
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391
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June 14, 2024
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Selection of RSV reference sequences
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2
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302
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May 23, 2024
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Problems for the SARS-CoV-2 Workflow
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1
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462
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May 19, 2023
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Inferring pathogen.json from a nextclade.tsv results
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0
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163
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April 16, 2024
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When Nextclade CLI calls clades but Nextclade Web does not
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0
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168
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April 16, 2024
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IQTREE error: Some sequences (see above) are problematic, please check your alignment again
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3
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1081
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April 11, 2024
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Can't open this page!
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1
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180
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March 12, 2024
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