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Error when trying to download zika pathogen repository
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1
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66
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October 14, 2025
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Teacher Q on Nextclade RSV-A reference dataset
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5
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124
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October 2, 2025
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Query about M2-2 gene annotation discrepancy in Nextstrain RSV-A module
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3
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98
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September 28, 2025
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Requested color-by field 'num_date' does not exist
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3
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115
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September 25, 2025
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Consensus on how to deal with segmented viruses?
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5
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194
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September 22, 2025
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Mistakes in the country label of some zika samples？
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5
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110
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September 4, 2025
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Filter parameters for all-time global SARS-CoV-2 dataset
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2
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86
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August 22, 2025
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Metadata.tsv: building custom nextclade dataset
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3
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158
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August 20, 2025
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Accessing geospatial data to map where and when a virus is most common
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1
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69
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August 13, 2025
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Xz: command not found
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5
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153
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August 13, 2025
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Why the zika tree doesn't include African genotype?
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0
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35
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August 13, 2025
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The pipeline takes a very long time to complete
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12
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191
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August 11, 2025
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Chikungunya Virus, 250 years old?
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3
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117
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August 10, 2025
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How can I know what columns will be in nextclade output?
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11
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171
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August 5, 2025
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Updated Runtime - unable to update CLI and view results
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3
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67
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August 4, 2025
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Negative Dates in Auspice Timeline When Using YY-XX-XX Format
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1
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68
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August 4, 2025
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Inconsistent QC Results Between Nextclade CLI and Web Version
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2
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76
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August 4, 2025
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Phylogenetic tree and map of plant viruses
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1
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109
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July 30, 2025
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How to display the distribution of lineages on a world map in auspice using the nextstrain build pipeline?
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1
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82
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July 25, 2025
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Use the pre-built phylogenetic trees for further analysis
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0
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56
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July 8, 2025
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H1N1 pdm09 tree - EPI ISL identifiers
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1
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67
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June 26, 2025
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Strain ID and the tab-delimited metadata in Prepare the Sequences
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4
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166
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June 23, 2025
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Need new reference sequences for SARS-CoV2?
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1
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77
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June 15, 2025
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RSV-A Reference Sequence Question
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2
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90
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June 13, 2025
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Sequecing data for Africa-Nigeria-Bayelsa
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0
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65
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June 11, 2025
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How to use criteria to use data from database (Genbank & GISAID)
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0
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65
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June 11, 2025
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Data displayed on nexstrain.org vs downloadable data
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2
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97
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June 5, 2025
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How can one identify host-adaptive/associated mutations from a tree?
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0
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55
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May 25, 2025
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Mapbox display issue (api changing without building auspice)
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3
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102
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May 12, 2025
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Output all amino acids per CDS using Nextclade
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2
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91
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May 7, 2025
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