|
Building custom nextclade dataset norovirus
|
|
7
|
225
|
October 17, 2025
|
|
Error when trying to download zika pathogen repository
|
|
1
|
68
|
October 14, 2025
|
|
Teacher Q on Nextclade RSV-A reference dataset
|
|
5
|
134
|
October 2, 2025
|
|
Query about M2-2 gene annotation discrepancy in Nextstrain RSV-A module
|
|
3
|
103
|
September 28, 2025
|
|
Requested color-by field 'num_date' does not exist
|
|
3
|
121
|
September 25, 2025
|
|
Consensus on how to deal with segmented viruses?
|
|
5
|
208
|
September 22, 2025
|
|
Mistakes in the country label of some zika samples？
|
|
5
|
119
|
September 4, 2025
|
|
Filter parameters for all-time global SARS-CoV-2 dataset
|
|
2
|
88
|
August 22, 2025
|
|
Metadata.tsv: building custom nextclade dataset
|
|
3
|
168
|
August 20, 2025
|
|
Accessing geospatial data to map where and when a virus is most common
|
|
1
|
71
|
August 13, 2025
|
|
Xz: command not found
|
|
5
|
160
|
August 13, 2025
|
|
Why the zika tree doesn't include African genotype?
|
|
0
|
36
|
August 13, 2025
|
|
The pipeline takes a very long time to complete
|
|
12
|
198
|
August 11, 2025
|
|
Chikungunya Virus, 250 years old?
|
|
3
|
120
|
August 10, 2025
|
|
How can I know what columns will be in nextclade output?
|
|
11
|
184
|
August 5, 2025
|
|
Updated Runtime - unable to update CLI and view results
|
|
3
|
74
|
August 4, 2025
|
|
Negative Dates in Auspice Timeline When Using YY-XX-XX Format
|
|
1
|
72
|
August 4, 2025
|
|
Inconsistent QC Results Between Nextclade CLI and Web Version
|
|
2
|
83
|
August 4, 2025
|
|
Phylogenetic tree and map of plant viruses
|
|
1
|
115
|
July 30, 2025
|
|
How to display the distribution of lineages on a world map in auspice using the nextstrain build pipeline?
|
|
1
|
92
|
July 25, 2025
|
|
Use the pre-built phylogenetic trees for further analysis
|
|
0
|
58
|
July 8, 2025
|
|
H1N1 pdm09 tree - EPI ISL identifiers
|
|
1
|
71
|
June 26, 2025
|
|
Strain ID and the tab-delimited metadata in Prepare the Sequences
|
|
4
|
172
|
June 23, 2025
|
|
Need new reference sequences for SARS-CoV2?
|
|
1
|
80
|
June 15, 2025
|
|
RSV-A Reference Sequence Question
|
|
2
|
93
|
June 13, 2025
|
|
Sequecing data for Africa-Nigeria-Bayelsa
|
|
0
|
67
|
June 11, 2025
|
|
How to use criteria to use data from database (Genbank & GISAID)
|
|
0
|
66
|
June 11, 2025
|
|
Data displayed on nexstrain.org vs downloadable data
|
|
2
|
101
|
June 5, 2025
|
|
How can one identify host-adaptive/associated mutations from a tree?
|
|
0
|
55
|
May 25, 2025
|
|
Mapbox display issue (api changing without building auspice)
|
|
3
|
106
|
May 12, 2025
|